Skip to content
Collaborative project in quantitative genetics of Arabidopsis thaliana

Sequencing Plant Genomes

  • xam
  • Barley
  • Methods
  • Hapmap
  • Bullet Blender Gold Next Advance
  • Pneumocystis Jirovecii Recombinant ExteRNAl Run Zeptometrix
  • NATtrol Clostridium Difficile Negative Control Zeptometrix
  • NATtrol Clostridium Difficile Positive Control Zeptometrix
  • Sphero Rainbow Singele Fluorescence Particle Spherotec
  • Bordetella Pertussis Parapertussis Positive Zeptometrix
  • Mouse Thrombocyte Platelet Rabbit Antibody Accurate Chemical
  • Epiquik M6a Rba Methylation Quantification Epigentek
  • Neptune Barrierstips 100 uL Low Retention Durviz
  • Epiquik Hat Activity Inhibition Assay Kit Epigentek
  • Methylflash Methylated DNA Quantification Epigentek
  • Antigen Kappa Lightchains Clonea8b5 Formp Exbio
  • Mouse Anti Zaire Ebola Virus Glycoprotein Alpha Diagnostics
  • Ultrarainbow Fluorescent Particle 1e7 /mL Spherotec
  • Dissecting Scalpel Blades F61 Curved Tip Sakura
  • Distibutors
  • Anti C mL Monoclonal Antibody Clone Cms Sceti
  • Antibody
  • Assay Kit
  • NATtrol
  • Medium
  • RNA
  • Elisa Kit
  • Recombinant Protein
  • antibodies covid
  • antibodies covid 19
  • antibodies decline
  • antibodies definition
  • antibodies fade
  • antibodies joke
  • antibodies medical meaning
  • antibodies movie
  • antibodies online
  • antibodies test
  • antibodies test covid
  • antibodies test covid 19
  • antibodies test for coronavirus
  • antibodies test for covid-19
  • antibodies vs t cells
  • biology cells definition
  • biology cells and molecules
  • biology cells notes
  • biology cells parts
  • biology cells pdf
  • Chromosome-level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi-C sequencing technologies
  • Whole genome sequence insight of two plant growth-promoting bacteria (B. subtilis BS87 and B. megaterium BM89) isolated and characterized from sugarcane rhizosphere depicting better crop yield potentiality
  • Recent advances in understanding mitochondrial genome diversity.
  • Contact Us
Chromosome-level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi-C sequencing technologies

Chromosome-level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi-C sequencing technologies

Antibody, Assay Kit, Default, Detection Kit, DNA, Elisa Kit, Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture., Kit, Lab Product, Lab Reagent, Lentivirus, Medium, Monoclonal Antibody, NATtrol, Particles, Polyclonal Antibody, Protein, Reagent, Recent advances in understanding mitochondrial genome diversity., Recombinant Protein, RNA, Stain, Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (Lactuca sativa)., Tips, Tissue, Tissue Array / By Leslie Obrien

Aegiceras corniculatum is a significant mangrove plant species tailored to waterlogging and saline circumstances, grows in the coastal intertidal zone of tropical and subtropical areas. Here, we current a chromosome-level genome assembly of A. corniculatum by incorporating PacBio long-read sequencing and Hi-C expertise. The outcomes confirmed that the PacBio draft genome measurement is 906.63 Mb. Hi-C scaffolding anchored 885.06 Mb contigs (97.62% of draft assembly) onto 24 pseudo-chromosomes. The contig N50 and scaffold N50 have been 7.1 Mb and 37.74 Mb, respectively.

Out of 40,727 protein-coding genes predicted in the research, 89% have practical annotations in public databases. We additionally confirmed that of the 603.93 Mb repetitive sequences predicted in the assembled genome, lengthy terminal repeat retrotransposons represent 41.52%. The genome evolution evaluation confirmed that the A. corniculatum genome skilled two whole-genome duplication occasions and shared the historical γ whole-genome triplication occasion.

A comparative genomic evaluation revealed an incidence of enlargement in 1,488 gene households related to important metabolism and biosynthetic pathways, together with photosynthesis, oxidative phosphorylation, phenylalanine, glyoxylate, dicarboxylate metabolism, and DNA replication, which possible represent adaptation traits that enable the A. corniculatum to outlive in the intertidal zone. Also, the systematic characterization of genes related to flavonoid biosynthesis pathway and the AcNHX gene household performed on this research will present perception into the adaptation mechanism of A. corniculatum to intertidal environments.

The high-quality genome reported right here can present historic insights into genomic transformations that assist the survival of A. corniculatum beneath harsh intertidal habitats. Availability of plant genome sequences has led to vital advances. However, with few exceptions, the nice majority of current genome assemblies are derived from brief learn sequencing technologies with extremely uneven learn coverages indicative of sequencing and assembly points that would considerably impression any downstream evaluation of plant genomes. In tomato for instance, 0.6% (5.1 Mb) and 9.7% (79.6 Mb) of short-read primarily based assembly had considerably larger and decrease protection in comparison with background, respectively.

To perceive what the causes could also be for such uneven protection, we first established machine studying fashions succesful of predicting genomic areas with variable coverages and discovered that prime protection areas are inclined to have larger easy sequence repeat and tandem gene densities in comparison with background areas. To decide if the excessive protection areas have been misassembled, we examined a not too long ago obtainable tomato long-read primarily based assembly and discovered that 27.8% (1.41 Mb) of excessive protection areas have been doubtlessly misassembled of duplicate sequences, in comparison with 1.4% in background areas.

Genome sequencing and evaluation of plant growth-promoting attributes from Leclercia adecarboxylata

 

Plant growth-promoting micro organism are ecological options for fertilization, primarily for gramineous. Since plant x micro organism interplay is genotype and pressure dependent, trying to find new strains might contribute to the improvement of new biofertilizers. We purpose to characterize plant growth-promoting capability of Leclercia adecarboxylata pressure Palotina, previously remoted by our group in corn. A single remoted colony was taken and its genome was sequenced utilizing Illumina expertise.

The complete genome was in comparison with different Leclercia adecarboxylata strains, and their organic and growth-promoting traits, comparable to P solubilization and auxin manufacturing, have been examined. Following that, a 4.8 Mb genome of L. adecarboxylata pressure Palotina was assembled and the practical annotation was carried out. This paper is the first to report the genes related to plant progress promotion demonstrating in vitro indole acid manufacturing by this pressure. These outcomes venture the endophyte as a possible biofertilizer for additional industrial exploitation.

Coffea canephora is a paramount financial plant with nice financial worth. The full chloroplast (cp) genome is 154,751 bp in size, together with a big single copy (LSC) area of 84,850 bp, a small single copy (SSC) area of 18,131 bp and a pair of inverted repeats (IRs) of 25,885bp. This cp genome comprises 131 genes, comprising of 86 protein-coding genes, 37 tRNAs and Eight rRNAs. The majority of these genes have been single copy genes, whereas 18 genes existed as double copies, together with 6 protein-coding genes (ndhB, rpl2, rpl23, rps12, rps7 and ycf2), Eight tRNA genes (trnA-UGC, trnG-GCC, trnI-CAU, trnI-GAU, trnL-CAA, trnN-GUU, trnR-ACG and trnV-GAC) and Four rRNA genes (rrn4.5, rrn5, rrn16 and rrn23).

A neighbour-joining phylogenetic tree was reconstructed to point that Coffea canephora is evolutionarily near Olea europaea inside Asterids. The full cp genome will present intragenic data for molecular phylogeny and organic research of the Rubiales. In addition, utilizing a predictive mannequin that may distinguish accurately and incorrectly assembled excessive protection areas, we discovered that misassembled, excessive protection areas are typically flanked by easy sequence repeats, pseudogenes, and transposon parts.

Chromosome-level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi-C sequencing technologies

Complete genome sequence of plant growth-promoting and heavy metal-tolerant Enterobacter tabaci 4M9 (CCB-MBL 5004)

 

Enterobacter tabaci 4M9 (CCB-MBL 5004) was reported to have plant growth-promoting and heavy steel tolerance traits. It was in a position to tolerate greater than 300 mg/L Cd, 600 mg/L As, and 500 mg/L Pb and nonetheless maintained the means to provide plant growth-promoting substances beneath steel stress circumstances. To discover the genetic foundation of these useful traits, the full genome sequencing of 4M9 was carried out utilizing Pacific Bioscience (PacBio) sequencing expertise.

Trypin for Mass & Sequencing
T9600-025 GenDepot 25ug
EUR 145

Trypin for Mass & Sequencing
T9600-100 GenDepot 100ug
EUR 219

Trypin for Mass & Sequencing
T9600-112 GenDepot 12x100ug
EUR 1657

Trypin for Mass & Sequencing
T9600-400 GenDepot 4x100ug
EUR 651

SequaGel Sequencing System 1L Kit
NAT1136 National Diagnostics 1KIT
EUR 143

SequaGel Sequencing System 2.2L Kit
NAT1138 National Diagnostics EACH
EUR 211

PCR Clean Up for DNA Sequencing
BT5100 Bio Basic 100preps
EUR 95.68

PCR Clean Up for DNA Sequencing
BT5101 Bio Basic 1000Preps, 1000prep
EUR 461.08

DNA Library Prep Kit for IIlumina Sequencing
K1475-12 Biovision 12 Rxns
EUR 480

Random Primers
S300 GeneOn 30 µg
EUR 46

Random Primers
S305 GeneOn 5x30 µg
EUR 102

U1 Primers
MP00001 ABM 150 ul / 10 uM
EUR 121

SNORD44 Primers
MPH00003 ABM 150 ul / 10 uM
EUR 121

SNORD47 Primers
MPH00004 ABM 150 ul / 10 uM
EUR 121

SNORD48 Primers
MPH00005 ABM 150 ul / 10 uM
EUR 121

RNU43 Primers
MPM00003 ABM 150 ul / 10 uM
EUR 121

snoRNA142 Primers
MPM00004 ABM 150 ul / 10 uM
EUR 121

U6-2 Primers
MPH00001 ABM 150 ul / 10 uM
EUR 121

U6 snRNA Primers
MPM00002 ABM 150 ul / 10 uM
EUR 121

U1 snRNA Primers
MPM00006 ABM 150 ul / 10 uM
EUR 121

rno-miR-323 Primers
MP-r00001 ABM 150 ul / 10 uM
EUR 176

rno-miR-301a Primers
MP-r00002 ABM 150 ul / 10 uM
EUR 176

rno-miR-326 Primers
MP-r00005 ABM 150 ul / 10 uM
EUR 176

rno-miR-327 Primers
MP-r00006 ABM 150 ul / 10 uM
EUR 176

rno-let-7d Primers
MP-r00007 ABM 150 ul / 10 uM
EUR 176

rno-miR-328 Primers
MP-r00008 ABM 150 ul / 10 uM
EUR 176

rno-miR-329 Primers
MP-r00009 ABM 150 ul / 10 uM
EUR 176

rno-miR-331 Primers
MP-r00010 ABM 150 ul / 10 uM
EUR 176

rno-miR-140 Primers
MP-r00011 ABM 150 ul / 10 uM
EUR 176

rno-miR-335 Primers
MP-r00012 ABM 150 ul / 10 uM
EUR 176

rno-miR-336 Primers
MP-r00013 ABM 150 ul / 10 uM
EUR 176

rno-miR-337 Primers
MP-r00014 ABM 150 ul / 10 uM
EUR 176

rno-miR-338 Primers
MP-r00015 ABM 150 ul / 10 uM
EUR 176

rno-miR-341 Primers
MP-r00017 ABM 150 ul / 10 uM
EUR 176

rno-miR-343 Primers
MP-r00018 ABM 150 ul / 10 uM
EUR 176

rno-miR-346 Primers
MP-r00020 ABM 150 ul / 10 uM
EUR 176

rno-miR-347 Primers
MP-r00021 ABM 150 ul / 10 uM
EUR 176

rno-miR-349 Primers
MP-r00022 ABM 150 ul / 10 uM
EUR 176

rno-miR-129 Primers
MP-r00023 ABM 150 ul / 10 uM
EUR 176

rno-miR-20a Primers
MP-r00024 ABM 150 ul / 10 uM
EUR 176

rno-miR-350 Primers
MP-r00025 ABM 150 ul / 10 uM
EUR 176

rno-miR-7a Primers
MP-r00026 ABM 150 ul / 10 uM
EUR 176

rno-miR-7a Primers
MP-r00027 ABM 150 ul / 10 uM
EUR 176

rno-miR-351 Primers
MP-r00028 ABM 150 ul / 10 uM
EUR 176

rno-miR-352 Primers
MP-r00029 ABM 150 ul / 10 uM
EUR 176

rno-miR-135b Primers
MP-r00030 ABM 150 ul / 10 uM
EUR 176

rno-miR-151 Primers
MP-r00031 ABM 150 ul / 10 uM
EUR 176

rno-miR-101b Primers
MP-r00032 ABM 150 ul / 10 uM
EUR 176

rno-let-7a Primers
MP-r00033 ABM 150 ul / 10 uM
EUR 176

rno-let-7b Primers
MP-r00034 ABM 150 ul / 10 uM
EUR 176

rno-let-7c Primers
MP-r00035 ABM 150 ul / 10 uM
EUR 176

rno-let-7e Primers
MP-r00036 ABM 150 ul / 10 uM
EUR 176

rno-let-7f Primers
MP-r00037 ABM 150 ul / 10 uM
EUR 176

rno-let-7i Primers
MP-r00038 ABM 150 ul / 10 uM
EUR 176

rno-miR-7b Primers
MP-r00039 ABM 150 ul / 10 uM
EUR 176

rno-miR-9 Primers
MP-r00040 ABM 150 ul / 10 uM
EUR 176

rno-miR-10b Primers
MP-r00042 ABM 150 ul / 10 uM
EUR 176

rno-miR-15b Primers
MP-r00043 ABM 150 ul / 10 uM
EUR 176

rno-miR-16 Primers
MP-r00044 ABM 150 ul / 10 uM
EUR 176

rno-miR-18a Primers
MP-r00047 ABM 150 ul / 10 uM
EUR 176

rno-miR-19b Primers
MP-r00048 ABM 150 ul / 10 uM
EUR 176

rno-miR-19a Primers
MP-r00049 ABM 150 ul / 10 uM
EUR 176

rno-miR-21 Primers
MP-r00050 ABM 150 ul / 10 uM
EUR 176

rno-miR-22 Primers
MP-r00051 ABM 150 ul / 10 uM
EUR 176

rno-miR-23a Primers
MP-r00052 ABM 150 ul / 10 uM
EUR 176

rno-miR-23b Primers
MP-r00053 ABM 150 ul / 10 uM
EUR 176

rno-miR-24 Primers
MP-r00054 ABM 150 ul / 10 uM
EUR 176

rno-miR-24 Primers
MP-r00055 ABM 150 ul / 10 uM
EUR 176

rno-miR-25 Primers
MP-r00056 ABM 150 ul / 10 uM
EUR 176

rno-miR-26a Primers
MP-r00057 ABM 150 ul / 10 uM
EUR 176

rno-miR-26b Primers
MP-r00058 ABM 150 ul / 10 uM
EUR 176

rno-miR-27b Primers
MP-r00059 ABM 150 ul / 10 uM
EUR 176

rno-miR-27a Primers
MP-r00060 ABM 150 ul / 10 uM
EUR 176

rno-miR-28 Primers
MP-r00061 ABM 150 ul / 10 uM
EUR 176

rno-miR-29b Primers
MP-r00062 ABM 150 ul / 10 uM
EUR 176

rno-miR-29b Primers
MP-r00063 ABM 150 ul / 10 uM
EUR 176

rno-miR-29a Primers
MP-r00064 ABM 150 ul / 10 uM
EUR 176

rno-miR-29c Primers
MP-r00065 ABM 150 ul / 10 uM
EUR 176

rno-miR-30c Primers
MP-r00066 ABM 150 ul / 10 uM
EUR 176

rno-miR-30e Primers
MP-r00067 ABM 150 ul / 10 uM
EUR 176

rno-miR-30d Primers
MP-r00069 ABM 150 ul / 10 uM
EUR 176

rno-miR-30a Primers
MP-r00070 ABM 150 ul / 10 uM
EUR 176

rno-miR-31 Primers
MP-r00071 ABM 150 ul / 10 uM
EUR 176

rno-miR-32 Primers
MP-r00072 ABM 150 ul / 10 uM
EUR 176

rno-miR-33 Primers
MP-r00073 ABM 150 ul / 10 uM
EUR 176

rno-miR-34b Primers
MP-r00074 ABM 150 ul / 10 uM
EUR 176

rno-miR-34c Primers
MP-r00075 ABM 150 ul / 10 uM
EUR 176

rno-miR-34a Primers
MP-r00076 ABM 150 ul / 10 uM
EUR 176

rno-miR-92a Primers
MP-r00077 ABM 150 ul / 10 uM
EUR 176

rno-miR-93 Primers
MP-r00078 ABM 150 ul / 10 uM
EUR 176

rno-miR-96 Primers
MP-r00079 ABM 150 ul / 10 uM
EUR 176

rno-miR-98 Primers
MP-r00080 ABM 150 ul / 10 uM
EUR 176

rno-miR-99a Primers
MP-r00081 ABM 150 ul / 10 uM
EUR 176

rno-miR-99b Primers
MP-r00082 ABM 150 ul / 10 uM
EUR 176

rno-miR-100 Primers
MP-r00083 ABM 150 ul / 10 uM
EUR 176

rno-miR-101a Primers
MP-r00084 ABM 150 ul / 10 uM
EUR 176
×

The full genome consisted of one chromosome of 4,654,430 bp with a GC content material of 54.6% and one plasmid of 51,135 bp with a GC content material of 49.4%. Genome annotation revealed a number of genes concerned in plant growth-promoting traits, together with the manufacturing of siderophore, indole acetic acid, and 1-aminocyclopropane-1-carboxylate deaminase; solubilization of phosphate and potassium; and nitrogen metabolism. Similarly, genes concerned in heavy metals tolerance have been detected.

Post navigation
← Previous Post
Next Post →

Categories

  • Antibody
  • Assay Kit
  • Default
  • Detection Kit
  • DNA
  • Elisa Kit
  • Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture.
  • Kit
  • Lab Product
  • Lab Reagent
  • Lentivirus
  • Medium
  • Monoclonal Antibody
  • NATtrol
  • Particles
  • Polyclonal Antibody
  • Protein
  • Reagent
  • Recent advances in understanding mitochondrial genome diversity.
  • Recombinant Protein
  • RNA
  • Stain
  • Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (Lactuca sativa).
  • Tips
  • Tissue
  • Tissue Array
July 2022
M T W T F S S
 123
45678910
11121314151617
18192021222324
25262728293031
« May    

Recent Posts

  • Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data.
  • Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites.
  • Bridging genomics and field research: draft genome sequence of Bacillus thuringiensis CR71, an endophytic bacterium that promotes plant growth and fruit yield in Cucumis sativus L.
  • A genome-wide identification, characterization and functional analysis of salt-related long non-coding RNAs in non-model plant Pistacia vera L. using transcriptome high throughput sequencing.
  • Chromosome-level assembly of the mangrove plant Aegiceras corniculatum genome generated through Illumina, PacBio and Hi-C sequencing technologies

Tags

panela panela cheese panel beater panel beds panel champ panel control panel de control panel de pon panel door paneles solares paneling paneling for walls panelist panella panelling panelpolls panel quilts ideas panels4less panel siding panel tactil paneltronics panel truck panel van particles.js particles and atoms particles crowded together particles flow particles for justice particles gif particleshop particleshop corel particles in urine particles in urine female particles in wood smoke particles life particles linguistics particles mod particles of a liquid particles of dark matter particles of faith trasancos particles particles particles png particles react npm particles smaller than quark particles synonym
Copyright © 2022 Collaborative project in quantitative genetics of Arabidopsis thaliana | Powered by Astra WordPress Theme