Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (Lactuca sativa).

Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (Lactuca sativa).

Circular RNA (circRNA) is a covalently-closed single-stranded RNA molecule that plays an important role in transcriptional regulation of gene expression in a variety of species. Light intensity is a pivotal environmental factor affecting plant growth and development. However, little is known regarding photoresponsive plant circRNAs. Here, we aimed to investigate the expression and function of circRNAs in lettuce leaves …

Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (Lactuca sativa). Read More »

Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture.

Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture.

Understanding the dynamics of pathogen transfer in aquaculture systems is essential to manage and mitigate disease outbreaks. The goal of this study was to understand recent transmission dynamics of salmonid alphavirus (SAV) in Norway. SAV causes significant economic impacts on farmed salmonids in European aquaculture. SAV is classified into six subtypes, with Norway having ongoing …

Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture. Read More »

Recent advances in understanding mitochondrial genome diversity.

Recent advances in understanding mitochondrial genome diversity.

Ever since its discovery, the double-stranded DNA contained in the mitochondria of eukaryotes has fascinated researchers attributable to its bacterial endosymbiotic origin, important place in encoding subunits of the respiratory complexes, compact nature, and specific inheritance mechanisms. In the last few years, high-throughput sequencing strategies have accelerated the sequencing of mitochondrial genomes (mitogenomes) and uncovered …

Recent advances in understanding mitochondrial genome diversity. Read More »

xam

eXtreme Array Mapping Light-Response Quantitative Trait Loci Identified with Composite Interval and eXtreme Array Mapping in Arabidopsis thaliana David J. Wolyn, Justin O. Borevitz, Olivier Loudet, Chris Schwartz, Julin Maloof, Joseph R. Ecker, Charles C. Berry and Joanne Chory Supplementary Data Kas X Col improved genetic map with additional marker data And .cel files from …

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Methods

RO1 GM073822 Principal Investigator Program Director: Borevitz, Justin GENOME WIDE ASSOCIATION MAPPING IN ARABIDOPSIS THALIANA Project Description Our proposal will investigate the genetic and molecular basis of complex traits and their interactions with the environment using the model plant Arabidopsis thaliana. We will implement a multi use, high density oligo-nucleotide tiling array for whole genome …

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Hapmap

Our suggestion will look into the molecular and genetic basis of complex attributes and their interactions with the environment with the model plant Arabidopsis thaliana. We’ll implement a multi usage, higher density oligo-nucleotide tiling selection for entire genome sequencing. The sample includes a mostly unstructured center set of 384 crazy A. thaliana genomes. This will …

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